click>=7.0
numpy
pandas
scipy
networkx
biopython
combat
gseapy
kmapper
lifelines
pingouin
python-louvain
PyWGCNA
snfpy
umap-learn
statsmodels
inmoose

[dev]
black
flake8
ruff
isort
pytest
pytest-cov
twine
wheel
jupytext
ipykernel

[docs]
sphinx
sphinx-book-theme
myst-nb
ipywidgets
sphinx-new-tab-link!=0.2.2
jupytext
