MANIFEST.in
README.md
setup.py
aacrgenie.egg-info/PKG-INFO
aacrgenie.egg-info/SOURCES.txt
aacrgenie.egg-info/dependency_links.txt
aacrgenie.egg-info/entry_points.txt
aacrgenie.egg-info/not-zip-safe
aacrgenie.egg-info/requires.txt
aacrgenie.egg-info/top_level.txt
bin/database_to_staging.py
bin/input_to_database.py
genie/__init__.py
genie/__main__.py
genie/__version__.py
genie/assay.py
genie/bed.py
genie/bedSP.py
genie/cbs.py
genie/clinical.py
genie/clinicalSP.py
genie/cna.py
genie/config.py
genie/consortium_to_public.py
genie/create_case_lists.py
genie/dashboard_table_updater.py
genie/database_to_staging.py
genie/example_filetype_format.py
genie/fusions.py
genie/input_to_database.py
genie/maf.py
genie/mafSP.py
genie/mutationsInCis.py
genie/patientRetraction.py
genie/process_functions.py
genie/process_mutation.py
genie/sampleRetraction.py
genie/seg.py
genie/toRetract.py
genie/validate.py
genie/vcf.py
genie/workflow.py
genie/write_invalid_reasons.py
tests/__init__.py
tests/test_assay.py
tests/test_bed.py
tests/test_cbs.py
tests/test_clinical.py
tests/test_clinicalSP.py
tests/test_cna.py
tests/test_create_case_lists.py
tests/test_database_to_staging.py
tests/test_filters.py
tests/test_fusions.py
tests/test_input_to_database.py
tests/test_maf.py
tests/test_mutationsInCis.py
tests/test_process_functions.py
tests/test_process_mutation.py
tests/test_retraction.py
tests/test_seg.py
tests/test_validate.py
tests/test_vcf.py
tests/test_workflow.py